miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5521 - 150098 89 22 -28.5 NP_044544 5' arm      3' arm
5292 + 131644 89 22 -28.5 NP_044544 5' arm      3' arm
5515 - 147878 86 21 -20.49 NP_044543 5' arm      3' arm
5319 + 147597 87 19.5 -23.9 NP_044542 5' arm      3' arm
5513 - 146813 90 20.5 -21.2 NP_044541 5' arm      3' arm
5318 + 146725 88 21 -25.24 NP_044541 5' arm      3' arm
5514 - 147059 90 21 -20.8 NP_044541 5' arm      3' arm
5511 - 146043 89 20 -20.3 NP_044540 5' arm      3' arm
5316 + 146015 90 20 -29 NP_044540 5' arm      3' arm
5506 - 144000 90 21 -25.9 NP_044538 5' arm      3' arm
5509 - 144898 89 20.5 -32.1 NP_044538 5' arm      3' arm
5313 + 144564 90 20.5 -25.8 NP_044538 5' arm      3' arm
5315 + 145252 90 19.5 -31.4 NP_044538 5' arm      3' arm
5508 - 144578 90 19.5 -23.9 NP_044538 5' arm      3' arm
5314 + 144706 90 21 -23.5 NP_044538 5' arm      3' arm
5312 + 143887 90 21 -31 NP_044538 5' arm      3' arm
5507 - 144193 89 19 -30.2 NP_044538 5' arm      3' arm
5504 - 141799 90 21.5 -24.5 NP_044536 5' arm      3' arm
5505 - 141988 86 20.5 -24.7 NP_044536 5' arm      3' arm
5503 - 141518 85 19.5 -22.4 NP_044536 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.