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GenBank Identifier | RefSeq Acc. | Name |
9629267 | NC_001798.1 | Human herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
5521 | - | 150098 | 89 | 22 | -28.5 | NP_044544 | 5' arm 3' arm | ||
5292 | + | 131644 | 89 | 22 | -28.5 | NP_044544 | 5' arm 3' arm | ||
5515 | - | 147878 | 86 | 21 | -20.49 | NP_044543 | 5' arm 3' arm | ||
5319 | + | 147597 | 87 | 19.5 | -23.9 | NP_044542 | 5' arm 3' arm | ||
5513 | - | 146813 | 90 | 20.5 | -21.2 | NP_044541 | 5' arm 3' arm | ||
5318 | + | 146725 | 88 | 21 | -25.24 | NP_044541 | 5' arm 3' arm | ||
5514 | - | 147059 | 90 | 21 | -20.8 | NP_044541 | 5' arm 3' arm | ||
5511 | - | 146043 | 89 | 20 | -20.3 | NP_044540 | 5' arm 3' arm | ||
5316 | + | 146015 | 90 | 20 | -29 | NP_044540 | 5' arm 3' arm | ||
5506 | - | 144000 | 90 | 21 | -25.9 | NP_044538 | 5' arm 3' arm | ||
5509 | - | 144898 | 89 | 20.5 | -32.1 | NP_044538 | 5' arm 3' arm | ||
5313 | + | 144564 | 90 | 20.5 | -25.8 | NP_044538 | 5' arm 3' arm | ||
5315 | + | 145252 | 90 | 19.5 | -31.4 | NP_044538 | 5' arm 3' arm | ||
5508 | - | 144578 | 90 | 19.5 | -23.9 | NP_044538 | 5' arm 3' arm | ||
5314 | + | 144706 | 90 | 21 | -23.5 | NP_044538 | 5' arm 3' arm | ||
5312 | + | 143887 | 90 | 21 | -31 | NP_044538 | 5' arm 3' arm | ||
5507 | - | 144193 | 89 | 19 | -30.2 | NP_044538 | 5' arm 3' arm | ||
5504 | - | 141799 | 90 | 21.5 | -24.5 | NP_044536 | 5' arm 3' arm | ||
5505 | - | 141988 | 86 | 20.5 | -24.7 | NP_044536 | 5' arm 3' arm | ||
5503 | - | 141518 | 85 | 19.5 | -22.4 | NP_044536 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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