miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56694721 NC_006560.1 Cercopithecine herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31269 - 149807 90 25.5 -30.5 5' arm      3' arm
31268 - 149682 87 22 -25.5 5' arm      3' arm
31267 - 146513 86 21 -26.92 YP_164502 5' arm      3' arm
31266 - 141979 88 20.5 -25.1 YP_164512 5' arm      3' arm
31265 - 139284 90 19.5 -22.3 YP_164509 5' arm      3' arm
31264 - 137210 87 23 -23.6 YP_164508 5' arm      3' arm
31263 - 136729 79 20.5 -21.02 5' arm      3' arm
31262 - 136323 89 19.5 -28.3 5' arm      3' arm
31261 - 134873 87 22 -35.5 YP_164506 5' arm      3' arm
31260 - 132656 88 22.5 -29 5' arm      3' arm
31259 - 130455 89 21.5 -25.7 YP_164503 5' arm      3' arm
31258 - 130106 90 21.5 -24.9 5' arm      3' arm
31257 - 124412 84 24 -31.8 5' arm      3' arm
31256 - 124288 84 24 -29.9 5' arm      3' arm
31255 - 124154 90 22 -30.1 5' arm      3' arm
31254 - 122756 88 24.5 -30 5' arm      3' arm
31253 - 122114 90 22 -23.8 5' arm      3' arm
31252 - 121848 90 20.5 -29.4 5' arm      3' arm
31251 - 121629 88 22.5 -28.8 5' arm      3' arm
31250 - 114717 90 24 -32.5 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.