miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56694721 NC_006560.1 Cercopithecine herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31007 + 27792 87 19 -22.4 YP_164455 5' arm      3' arm
31003 + 20506 86 22 -20.9 YP_164451 5' arm      3' arm
31004 + 22533 87 20 -20.4 YP_164451 5' arm      3' arm
31005 + 23548 90 20 -19.5 YP_164452 5' arm      3' arm
31006 + 27678 88 22 -25.1 YP_164455 5' arm      3' arm
31008 + 28932 87 22 -25.4 YP_164457 5' arm      3' arm
31009 + 29020 87 20.5 -24.2 YP_164457 5' arm      3' arm
31011 + 30200 84 20 -27.9 YP_164458 5' arm      3' arm
31010 + 29649 89 19.5 -21.4 YP_164457 5' arm      3' arm
30998 + 10727 88 19 -19.5 YP_164444 5' arm      3' arm
30997 + 10623 88 19 -26 YP_164444 5' arm      3' arm
30996 + 9575 89 21 -20.51 YP_164443 5' arm      3' arm
30994 + 1901 88 22.5 -28.8 5' arm      3' arm
30992 + 1416 90 22 -23.8 5' arm      3' arm
30993 + 1682 90 20.5 -29.4 5' arm      3' arm
30995 + 8813 90 24 -32.5 5' arm      3' arm
31000 + 12484 90 25.5 -34.8 5' arm      3' arm
31002 + 13626 89 22.5 -26.4 YP_164447 5' arm      3' arm
30999 + 11815 87 22 -26.8 5' arm      3' arm
31001 + 12741 88 21.5 -23.8 YP_164447 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.