miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
21585	-	20880	88	22	-37.5	NP_851868		5' arm      3' arm
21545	+	140352	76	19	-37.4			5' arm      3' arm
21461	+	72106	87	20	-37.2	NP_851896		5' arm      3' arm
21547	+	144096	90	22.5	-35.4			5' arm      3' arm
21488	+	89046	89	19.5	-34.8	NP_851899		5' arm      3' arm
21702	-	115962	80	21	-34.7			5' arm      3' arm
21658	-	81642	90	19	-34.7	NP_851897		5' arm      3' arm
21559	-	7283	90	25.5	-34.2			5' arm      3' arm
21503	+	97339	89	19	-34.2	NP_851905		5' arm      3' arm
21533	+	118575	90	25.5	-34.2			5' arm      3' arm
21606	-	40238	88	23	-34.1	NP_851879		5' arm      3' arm
21375	+	6958	89	21	-33.8			5' arm      3' arm
21706	-	118900	89	21	-33.8			5' arm      3' arm
21567	-	11244	86	19.5	-33.1	NP_851862		5' arm      3' arm
21519	+	108380	89	20.5	-32.5	NP_851913		5' arm      3' arm
21602	-	36667	88	22	-32.4	NP_851878		5' arm      3' arm
21582	-	20415	87	22	-32	NP_851868		5' arm      3' arm
21499	+	93068	79	20.5	-31.9	NP_851902		5' arm      3' arm
21452	+	66244	86	20.5	-31.5	NP_851891		5' arm      3' arm
21551	+	147327	89	24.5	-31.3	NP_851930		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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