miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
50313241 NC_001491.2 Equid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2641 + 22674 89 23.5 -20.7 YP_053061 5' arm      3' arm
2642 + 31075 89 19 -24.4 YP_053066 5' arm      3' arm
2643 + 31749 88 19 -19.4 YP_053067 5' arm      3' arm
2644 + 33478 90 20.5 -22.5 YP_053068 5' arm      3' arm
2645 + 34681 89 20 -25.4 YP_053068 5' arm      3' arm
2646 + 37380 85 19 -27 YP_053069 5' arm      3' arm
2647 + 38064 88 20.5 -23.8 YP_053069 5' arm      3' arm
2648 + 40386 85 20 -22.2 YP_053069 5' arm      3' arm
2649 + 41549 89 21.5 -20.3 YP_053069 5' arm      3' arm
2650 + 47489 90 20 -23.6 YP_053071 5' arm      3' arm
2651 + 49535 77 19.5 -26.4 YP_053073 5' arm      3' arm
2652 + 50212 90 20 -27.7 YP_053073 5' arm      3' arm
2653 + 53127 90 23 -20.1 YP_053075 5' arm      3' arm
2654 + 53450 90 23 -28.3 YP_053075 5' arm      3' arm
2655 + 54938 89 20 -20.6 YP_053075 5' arm      3' arm
2656 + 55735 88 20 -19.8 YP_053076 5' arm      3' arm
2657 + 58516 88 19 -19.9 YP_053076 5' arm      3' arm
2658 + 60139 90 19 -20.9 YP_053077 5' arm      3' arm
2659 + 60698 89 22 -27.1 YP_053077 5' arm      3' arm
2660 + 60890 89 22.5 -23.79 YP_053077 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.