miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629732 NC_001844.1 Equid herpesvirus 4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6313 - 142234 84 23 -37 NP_045296 5' arm      3' arm
6231 + 115816 84 23 -37 NP_045296 5' arm      3' arm
6197 + 2170 90 26.5 -32.4 5' arm      3' arm
6213 + 70256 87 19 -31.5 NP_045256 5' arm      3' arm
6287 - 110851 90 22 -31.2 NP_045280 5' arm      3' arm
6285 - 108679 90 34 -29.3 5' arm      3' arm
6284 - 108589 90 34 -29.3 5' arm      3' arm
6286 - 108769 90 34 -29.3 5' arm      3' arm
6302 - 135490 89 19 -29.1 NP_045293 5' arm      3' arm
6255 - 442 89 25 -28.7 5' arm      3' arm
6253 - 255 89 25 -28.7 5' arm      3' arm
6232 + 115920 89 23 -28.5 NP_045296 5' arm      3' arm
6312 - 142130 89 23 -28.5 NP_045296 5' arm      3' arm
6256 - 536 89 25 -28 5' arm      3' arm
6254 - 349 89 25 -28 5' arm      3' arm
6201 + 17008 89 22 -27.93 NP_045230 5' arm      3' arm
6238 + 118868 81 19 -27.62 5' arm      3' arm
6306 - 139182 81 19 -27.62 5' arm      3' arm
6283 - 105125 89 23 -27.4 NP_045275 5' arm      3' arm
6214 + 72483 90 19.5 -27.3 NP_045257 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.