miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9625875 NC_001348.1 Human herpesvirus 3 (strain Dumas)

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2058 + 23909 88 24.5 -27.4 5' arm      3' arm
2094 - 100348 89 22 -27.1 5' arm      3' arm
2057 + 2288 90 20 -19.8 NP_040126 5' arm      3' arm
2056 + 2032 89 19.5 -20 NP_040126 5' arm      3' arm
2084 - 8762 89 19 -19.51 NP_040130 5' arm      3' arm
2059 + 42454 89 22.5 -22.9 NP_040146 5' arm      3' arm
2085 - 47796 90 20 -25.2 NP_040151 5' arm      3' arm
2060 + 51747 81 19.5 -25.6 NP_040152 5' arm      3' arm
2061 + 59052 87 22.5 -22.1 NP_040154 5' arm      3' arm
2087 - 66794 90 19.5 -22.1 NP_040160 5' arm      3' arm
2086 - 66592 90 21.5 -22.41 NP_040160 5' arm      3' arm
2062 + 66753 90 19.5 -24.5 NP_040160 5' arm      3' arm
2088 - 73905 89 21.5 -23.2 NP_040163 5' arm      3' arm
2089 - 74909 85 19 -23.5 NP_040163 5' arm      3' arm
2090 - 90317 90 21 -19.7 NP_040173 5' arm      3' arm
2063 + 91776 86 24 -23.7 NP_040174 5' arm      3' arm
2064 + 92143 88 21 -26.6 NP_040174 5' arm      3' arm
2091 - 92618 86 24.5 -22.7 NP_040174 5' arm      3' arm
2092 - 93086 88 19.5 -26 NP_040175 5' arm      3' arm
2093 - 99051 87 19 -21.8 NP_040178 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.