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| GenBank Identifier | RefSeq Acc. | Name |
| 9625875 | NC_001348.1 | Human herpesvirus 3 (strain Dumas) |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 2093 | - | 99051 | 87 | 19 | -21.8 | NP_040178 | 5' arm 3' arm | ||
| 2074 | + | 108622 | 87 | 19 | -25.71 | NP_040193 | 5' arm 3' arm | ||
| 2098 | - | 106765 | 87 | 19 | -29.1 | NP_040184 | 5' arm 3' arm | ||
| 2070 | + | 106891 | 90 | 19 | -22.5 | NP_040184 | 5' arm 3' arm | ||
| 2089 | - | 74909 | 85 | 19 | -23.5 | NP_040163 | 5' arm 3' arm | ||
| 2084 | - | 8762 | 89 | 19 | -19.51 | NP_040130 | 5' arm 3' arm | ||
| 2109 | - | 123006 | 90 | 19 | -22.5 | NP_040193 | 5' arm 3' arm | ||
| 2105 | - | 121275 | 87 | 19 | -25.71 | NP_040184 | 5' arm 3' arm | ||
| 2080 | + | 123132 | 87 | 19 | -29.1 | NP_040184 | 5' arm 3' arm | ||
| 2056 | + | 2032 | 89 | 19.5 | -20 | NP_040126 | 5' arm 3' arm | ||
| 2100 | - | 107943 | 89 | 19.5 | -20.8 | NP_040184 | 5' arm 3' arm | ||
| 2081 | + | 123327 | 88 | 19.5 | -23.6 | NP_040184 | 5' arm 3' arm | ||
| 2072 | + | 107760 | 84 | 19.5 | -25.5 | NP_040184 | 5' arm 3' arm | ||
| 2060 | + | 51747 | 81 | 19.5 | -25.6 | NP_040152 | 5' arm 3' arm | ||
| 2087 | - | 66794 | 90 | 19.5 | -22.1 | NP_040160 | 5' arm 3' arm | ||
| 2092 | - | 93086 | 88 | 19.5 | -26 | NP_040175 | 5' arm 3' arm | ||
| 2078 | + | 121954 | 89 | 19.5 | -20.8 | NP_040184 | 5' arm 3' arm | ||
| 2097 | - | 106570 | 88 | 19.5 | -23.6 | NP_040184 | 5' arm 3' arm | ||
| 2062 | + | 66753 | 90 | 19.5 | -24.5 | NP_040160 | 5' arm 3' arm | ||
| 2107 | - | 122137 | 84 | 19.5 | -25.5 | NP_040193 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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