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| GenBank Identifier | RefSeq Acc. | Name |
| 51557483 | NC_006151.1 | Suid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29374 | + | 6054 | 90 | 19.5 | -20 | YP_068322 | 5' arm 3' arm | ||
| 29543 | - | 28357 | 90 | 24 | -20 | YP_068333 | 5' arm 3' arm | ||
| 29623 | - | 102699 | 90 | 23 | -20.1 | YP_068381 | 5' arm 3' arm | ||
| 29575 | - | 64265 | 90 | 21.5 | -20.1 | 5' arm 3' arm | |||
| 29518 | + | 141903 | 90 | 23 | -20.1 | YP_068381 | 5' arm 3' arm | ||
| 29544 | - | 29899 | 89 | 20 | -20.1 | YP_068335 | 5' arm 3' arm | ||
| 29529 | - | 13718 | 89 | 20 | -20.2 | YP_068328 | 5' arm 3' arm | ||
| 29604 | - | 87817 | 89 | 20 | -20.2 | YP_068370 | 5' arm 3' arm | ||
| 29376 | + | 6689 | 90 | 20 | -20.3 | YP_068322 | 5' arm 3' arm | ||
| 29526 | - | 5069 | 90 | 21 | -20.3 | YP_068322 | 5' arm 3' arm | ||
| 29402 | + | 26499 | 90 | 22.5 | -20.4 | YP_068333 | 5' arm 3' arm | ||
| 29437 | + | 57296 | 88 | 19 | -20.4 | YP_068350 | 5' arm 3' arm | ||
| 29607 | - | 91545 | 86 | 22.5 | -20.4 | YP_068371 | 5' arm 3' arm | ||
| 29411 | + | 32284 | 90 | 22 | -20.5 | YP_068338 | 5' arm 3' arm | ||
| 29413 | + | 34397 | 89 | 21 | -20.5 | YP_068339 | 5' arm 3' arm | ||
| 29609 | - | 93573 | 89 | 19 | -20.51 | YP_068374 | 5' arm 3' arm | ||
| 29422 | + | 42901 | 85 | 21 | -20.6 | YP_068340 | 5' arm 3' arm | ||
| 29471 | + | 89056 | 90 | 22.5 | -20.6 | YP_068370 | 5' arm 3' arm | ||
| 29487 | + | 97474 | 90 | 21.5 | -20.6 | YP_068377 | 5' arm 3' arm | ||
| 29561 | - | 50618 | 88 | 19 | -20.7 | YP_068344 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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