miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29642	-	128126	88	19	-29.1	YP_068383		5' arm      3' arm
29590	-	70698	90	20.5	-29	YP_068356		5' arm      3' arm
29419	+	38168	87	23.5	-29	YP_068339		5' arm      3' arm
29620	-	100449	90	21.5	-28.9			5' arm      3' arm
29621	-	101120	89	21.5	-28.8			5' arm      3' arm
29368	+	3243	85	19	-28.7	YP_068320		5' arm      3' arm
29381	+	10735	90	23	-28.4	YP_068327		5' arm      3' arm
29539	-	26514	90	20.5	-28.4	YP_068333		5' arm      3' arm
29410	+	31747	89	20	-28.3	YP_068337		5' arm      3' arm
29490	+	99234	90	22.5	-28.2			5' arm      3' arm
29394	+	21299	90	19	-28.2	YP_068331		5' arm      3' arm
29551	-	45335	87	20.5	-28.1	YP_068341		5' arm      3' arm
29603	-	87663	89	24.5	-28.1	YP_068370		5' arm      3' arm
29622	-	102053	90	22	-28.1			5' arm      3' arm
29472	+	89181	83	19.5	-28.1	YP_068370		5' arm      3' arm
29459	+	80881	89	21.5	-28.1	YP_068365		5' arm      3' arm
29562	-	50710	90	21.5	-28.1	YP_068344		5' arm      3' arm
29519	+	142549	90	22	-28.1			5' arm      3' arm
29389	+	18341	90	22	-28	YP_068330		5' arm      3' arm
29528	-	12809	90	21	-27.9	YP_068328		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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