miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628290 NC_001664.1 Human herpesvirus 6

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
4189 - 155287 90 25 -20.6 NP_042887 5' arm      3' arm
4172 - 3483 87 23 -23.6 5' arm      3' arm
4173 - 3856 86 22 -22.7 NP_042999 5' arm      3' arm
4171 - 3216 90 19.5 -19.6 5' arm      3' arm
4190 - 155593 89 21.5 -20.2 5' arm      3' arm
4185 - 154231 89 28 -29 NP_042997 5' arm      3' arm
4183 - 117925 90 20.5 -32.7 5' arm      3' arm
4182 - 25121 81 20 -25.8 NP_042906 5' arm      3' arm
4177 - 9157 90 22.5 -19.4 NP_042893 5' arm      3' arm
4174 - 4054 90 25 -20.6 NP_042887 5' arm      3' arm
4178 - 9586 89 21 -21.5 NP_042893 5' arm      3' arm
4180 - 12651 89 21.5 -28.8 NP_042895 5' arm      3' arm
4187 - 154716 87 23 -23.6 5' arm      3' arm
4176 - 9056 89 20 -25.9 NP_042893 5' arm      3' arm
4188 - 155089 86 22 -22.7 NP_042887 5' arm      3' arm
4181 - 16163 87 22 -19.6 NP_042899 5' arm      3' arm
4169 - 2998 89 28 -29 NP_042997 5' arm      3' arm
4170 - 3119 90 22.5 -19.8 5' arm      3' arm
4186 - 154429 88 22 -26.1 5' arm      3' arm
4184 - 153054 90 21.5 -29.2 NP_042884 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.