miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18138525 NC_003347.1 Grapevine fleck virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12691 + 5782 88 21 -26.6 NP_542612 5' arm      3' arm
12692 - 1653 83 22.5 -29.2 NP_542612 5' arm      3' arm
12693 - 3607 90 19.5 -27.3 NP_542612 5' arm      3' arm
12694 - 5123 89 21 -25.4 NP_542612 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.