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| GenBank Identifier | RefSeq Acc. | Name |
| 82503188 | NC_007605.1 | Human herpesvirus 4 |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 33284 | + | 44529 | 90 | 21.5 | -29.6 | YP_401647 | 5' arm 3' arm | ||
| 33285 | + | 44955 | 89 | 21.5 | -27.7 | YP_401648 | 5' arm 3' arm | ||
| 33286 | + | 45160 | 90 | 19.5 | -21.2 | YP_401648 | 5' arm 3' arm | ||
| 33287 | + | 45981 | 88 | 20 | -22.1 | YP_401648 | 5' arm 3' arm | ||
| 33288 | + | 47652 | 88 | 23 | -22.3 | YP_401650 | 5' arm 3' arm | ||
| 33289 | + | 48187 | 88 | 19 | -21.1 | YP_401650 | 5' arm 3' arm | ||
| 33290 | + | 48433 | 85 | 21 | -21.3 | YP_401650 | 5' arm 3' arm | ||
| 33291 | + | 49409 | 89 | 20.5 | -28.8 | YP_401651 | 5' arm 3' arm | ||
| 33292 | + | 49940 | 90 | 20.5 | -27.9 | YP_401652 | 5' arm 3' arm | ||
| 33293 | + | 50723 | 87 | 22.5 | -27.1 | YP_401652 | 5' arm 3' arm | ||
| 33294 | + | 51188 | 85 | 19 | -21.6 | YP_401652 | 5' arm 3' arm | ||
| 33295 | + | 51335 | 86 | 19.5 | -22.7 | YP_401652 | 5' arm 3' arm | ||
| 33296 | + | 51476 | 88 | 19 | -22.7 | YP_401652 | 5' arm 3' arm | ||
| 33297 | + | 52331 | 88 | 23 | -28.7 | YP_401652 | 5' arm 3' arm | ||
| 33298 | + | 52754 | 90 | 23 | -22.1 | YP_401652 | 5' arm 3' arm | ||
| 33299 | + | 53100 | 90 | 20 | -28.2 | YP_401652 | 5' arm 3' arm | ||
| 33300 | + | 53223 | 89 | 20.5 | -22.6 | YP_401652 | 5' arm 3' arm | ||
| 33301 | + | 53833 | 90 | 20 | -27.8 | YP_401652 | 5' arm 3' arm | ||
| 33302 | + | 54219 | 89 | 20.5 | -28.81 | YP_401652 | 5' arm 3' arm | ||
| 33303 | + | 54832 | 90 | 20.5 | -20.7 | YP_401652 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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