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GenBank Identifier | RefSeq Acc. | Name |
20260793 | NC_003691.1 | Pariacoto virus RNA1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
14994 | + | 691 | 90 | 25.5 | -21.7 | NP_620109 | 5' arm 3' arm | ||
14995 | + | 879 | 90 | 22.5 | -26.3 | NP_620109 | 5' arm 3' arm | ||
14996 | + | 1021 | 90 | 21.5 | -21 | NP_620109 | 5' arm 3' arm | ||
14997 | + | 2005 | 90 | 20.5 | -28.2 | NP_620109 | 5' arm 3' arm | ||
14998 | + | 2506 | 90 | 26.5 | -23.6 | NP_620109 | 5' arm 3' arm | ||
14999 | - | 379 | 88 | 21.5 | -21.4 | NP_620109 | 5' arm 3' arm | ||
15000 | - | 1226 | 90 | 22.5 | -21.1 | NP_620109 | 5' arm 3' arm | ||
15001 | - | 2986 | 84 | 20 | -20.5 | 5' arm 3' arm | |||
15002 | + | 769 | 90 | 24.5 | -28 | NP_620111 | 5' arm 3' arm | ||
15003 | - | 180 | 90 | 20.5 | -25.8 | NP_620111 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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