miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20260793 NC_003691.1 Pariacoto virus RNA1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14994 + 691 90 25.5 -21.7 NP_620109 5' arm      3' arm
14995 + 879 90 22.5 -26.3 NP_620109 5' arm      3' arm
14996 + 1021 90 21.5 -21 NP_620109 5' arm      3' arm
14997 + 2005 90 20.5 -28.2 NP_620109 5' arm      3' arm
14998 + 2506 90 26.5 -23.6 NP_620109 5' arm      3' arm
14999 - 379 88 21.5 -21.4 NP_620109 5' arm      3' arm
15000 - 1226 90 22.5 -21.1 NP_620109 5' arm      3' arm
15001 - 2986 84 20 -20.5 5' arm      3' arm
15002 + 769 90 24.5 -28 NP_620111 5' arm      3' arm
15003 - 180 90 20.5 -25.8 NP_620111 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.