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GenBank Identifier | RefSeq Acc. | Name |
18249864 | NC_003356.1 | Bacteriophage P27 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
12719 | + | 12352 | 90 | 22.5 | -27.2 | NP_543071 | 5' arm 3' arm | ||
12718 | + | 11118 | 83 | 19 | -20.4 | NP_543069 | 5' arm 3' arm | ||
12723 | + | 20796 | 82 | 21.5 | -22.9 | 5' arm 3' arm | |||
12721 | + | 19252 | 90 | 21 | -22.2 | NP_543080 | 5' arm 3' arm | ||
12722 | + | 20699 | 85 | 20.5 | -25 | NP_543084 | 5' arm 3' arm | ||
12720 | + | 19156 | 89 | 20 | -24.6 | NP_543080 | 5' arm 3' arm | ||
12724 | + | 24159 | 90 | 25 | -20 | NP_543089 | 5' arm 3' arm | ||
12725 | + | 24394 | 89 | 23 | -24.9 | NP_543090 | 5' arm 3' arm | ||
12726 | + | 25541 | 89 | 20.5 | -21.9 | NP_543091 | 5' arm 3' arm | ||
12727 | + | 27130 | 89 | 19.5 | -20.9 | NP_543092 | 5' arm 3' arm | ||
12728 | + | 28157 | 87 | 25 | -24.2 | NP_543094 | 5' arm 3' arm | ||
12729 | + | 28529 | 86 | 23.5 | -28.2 | NP_543094 | 5' arm 3' arm | ||
12736 | + | 31769 | 90 | 22 | -23.84 | NP_543099 | 5' arm 3' arm | ||
12733 | + | 30891 | 88 | 21.5 | -20.5 | NP_543097 | 5' arm 3' arm | ||
12730 | + | 28634 | 90 | 21 | -23.8 | NP_543095 | 5' arm 3' arm | ||
12734 | + | 31083 | 90 | 20 | -22.2 | NP_543097 | 5' arm 3' arm | ||
12731 | + | 28921 | 90 | 19.5 | -26.5 | NP_543095 | 5' arm 3' arm | ||
12745 | - | 21728 | 89 | 22 | -25.3 | NP_543086 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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