miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
13095578 NC_002665.1 Bovine herpesvirus 4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
10231 - 87993 87 19.5 -29.2 NP_076556 5' arm      3' arm
10232 - 97632 85 24.5 -36.94 5' arm      3' arm
10233 - 107344 88 19 -21.9 5' arm      3' arm
10223 - 21329 89 22.5 -25.53 5' arm      3' arm
10225 - 24880 89 20 -25.2 NP_076509 5' arm      3' arm
10226 - 28584 90 20 -22 NP_076513 5' arm      3' arm
10220 - 5709 90 22.5 -20.5 5' arm      3' arm
10221 - 14591 82 22 -20.4 NP_076501 5' arm      3' arm
10224 - 21949 90 24.5 -24 5' arm      3' arm
10227 - 64948 77 21 -20.9 NP_076541 5' arm      3' arm
10229 - 83593 90 20 -21.7 NP_076556 5' arm      3' arm
10219 - 2745 89 19.5 -22.71 NP_076495 5' arm      3' arm
10228 - 80555 90 21 -28 NP_076555 5' arm      3' arm
10222 - 17827 90 22.5 -28.3 NP_076502 5' arm      3' arm
10218 - 216 85 19.5 -26.1 5' arm      3' arm
10230 - 86295 90 23 -28.8 NP_076556 5' arm      3' arm
10213 + 100059 90 19.5 -21.5 NP_076567 5' arm      3' arm
10214 + 102334 86 20 -26.71 NP_076568 5' arm      3' arm
10212 + 98014 89 22 -26.22 5' arm      3' arm
10210 + 97068 83 22.5 -28.3 NP_076563 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.