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GenBank Identifier | RefSeq Acc. | Name |
13095578 | NC_002665.1 | Bovine herpesvirus 4 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
10201 | + | 15613 | 89 | 21 | -24.3 | NP_076501 | 5' arm 3' arm | ||
10225 | - | 24880 | 89 | 20 | -25.2 | NP_076509 | 5' arm 3' arm | ||
10223 | - | 21329 | 89 | 22.5 | -25.53 | 5' arm 3' arm | |||
10203 | + | 23760 | 89 | 21.5 | -25.6 | NP_076509 | 5' arm 3' arm | ||
10218 | - | 216 | 85 | 19.5 | -26.1 | 5' arm 3' arm | |||
10212 | + | 98014 | 89 | 22 | -26.22 | 5' arm 3' arm | |||
10214 | + | 102334 | 86 | 20 | -26.71 | NP_076568 | 5' arm 3' arm | ||
10228 | - | 80555 | 90 | 21 | -28 | NP_076555 | 5' arm 3' arm | ||
10210 | + | 97068 | 83 | 22.5 | -28.3 | NP_076563 | 5' arm 3' arm | ||
10222 | - | 17827 | 90 | 22.5 | -28.3 | NP_076502 | 5' arm 3' arm | ||
10230 | - | 86295 | 90 | 23 | -28.8 | NP_076556 | 5' arm 3' arm | ||
10231 | - | 87993 | 87 | 19.5 | -29.2 | NP_076556 | 5' arm 3' arm | ||
10202 | + | 21241 | 89 | 24 | -31.6 | 5' arm 3' arm | |||
10232 | - | 97632 | 85 | 24.5 | -36.94 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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