miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
8644	+	139599	90	20.5	-35.1			5' arm      3' arm
8702	-	173154	90	20.5	-35.1			5' arm      3' arm
8674	-	46339	89	20.5	-34.1	NP_057777		5' arm      3' arm
8622	+	46253	90	21	-33.8	NP_057777		5' arm      3' arm
8697	-	167824	89	22.5	-31.7	YP_053234		5' arm      3' arm
8648	+	144929	89	22.5	-31.7	YP_053234		5' arm      3' arm
8661	-	2805	87	26.5	-31.6	NP_057832		5' arm      3' arm
8637	+	135871	87	26.5	-31.6	NP_057745		5' arm      3' arm
8671	-	6283	87	27.5	-31.4			5' arm      3' arm
8627	+	132393	87	27.5	-31.4			5' arm      3' arm
8669	-	5941	87	29	-29.8	NP_057829		5' arm      3' arm
8629	+	132735	87	29	-29.8	NP_057748		5' arm      3' arm
8687	-	138365	90	24	-27.4	NP_057836		5' arm      3' arm
8685	-	137791	87	21.5	-27.4	NP_057836		5' arm      3' arm
8701	-	172836	90	27	-27.4			5' arm      3' arm
8616	+	885	87	21.5	-27.4	NP_057741		5' arm      3' arm
8614	+	311	90	24	-27.4	NP_057836		5' arm      3' arm
8677	-	77308	90	23	-26.9	NP_057795		5' arm      3' arm
8630	+	132870	88	27.5	-26.6	NP_057748		5' arm      3' arm
8668	-	5806	88	27.5	-26.6	NP_057748		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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