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GenBank Identifier | RefSeq Acc. | Name |
50345893 | NC_002229.2 | Gallid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8631 | + | 133316 | 87 | 21.5 | -22.3 | 5' arm 3' arm | |||
8632 | + | 134623 | 87 | 22 | -24.9 | 5' arm 3' arm | |||
8622 | + | 46253 | 90 | 21 | -33.8 | NP_057777 | 5' arm 3' arm | ||
8621 | + | 11839 | 88 | 25 | -22.4 | NP_057752 | 5' arm 3' arm | ||
8620 | + | 6720 | 89 | 24.5 | -25.6 | 5' arm 3' arm | |||
8619 | + | 6196 | 88 | 24.5 | -19.9 | 5' arm 3' arm | |||
8615 | + | 488 | 89 | 19 | -25.9 | NP_057741 | 5' arm 3' arm | ||
8618 | + | 3538 | 87 | 20.5 | -21.9 | 5' arm 3' arm | |||
8616 | + | 885 | 87 | 21.5 | -27.4 | NP_057741 | 5' arm 3' arm | ||
8617 | + | 2629 | 90 | 22 | -20.3 | NP_057833 | 5' arm 3' arm | ||
8623 | + | 77220 | 89 | 26 | -24.7 | NP_057795 | 5' arm 3' arm | ||
8624 | + | 107611 | 90 | 21.5 | -25.1 | NP_057809 | 5' arm 3' arm | ||
8633 | + | 135050 | 90 | 23 | -26.3 | 5' arm 3' arm | |||
8634 | + | 135380 | 89 | 24.5 | -26.5 | 5' arm 3' arm | |||
8626 | + | 132108 | 89 | 26.5 | -19.44 | 3' arm | |||
8630 | + | 132870 | 88 | 27.5 | -26.6 | NP_057748 | 5' arm 3' arm | ||
8627 | + | 132393 | 87 | 27.5 | -31.4 | 5' arm 3' arm | |||
8628 | + | 132586 | 87 | 28 | -23.5 | 5' arm | |||
8629 | + | 132735 | 87 | 29 | -29.8 | NP_057748 | 5' arm 3' arm | ||
8625 | + | 126749 | 90 | 27 | -21.9 | NP_057752 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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