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GenBank Identifier | RefSeq Acc. | Name |
50345893 | NC_002229.2 | Gallid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8632 | + | 134623 | 87 | 22 | -24.9 | 5' arm 3' arm | |||
8631 | + | 133316 | 87 | 21.5 | -22.3 | 5' arm 3' arm | |||
8645 | + | 140155 | 86 | 26.5 | -20.7 | 3' arm | |||
8646 | + | 140277 | 88 | 25 | -25 | 3' arm | |||
8647 | + | 143366 | 90 | 21.5 | -19.7 | YP_053222 | 5' arm 3' arm | ||
8649 | + | 148058 | 89 | 23.5 | -21.3 | YP_053222 | 5' arm 3' arm | ||
8648 | + | 144929 | 89 | 22.5 | -31.7 | YP_053234 | 5' arm 3' arm | ||
8650 | + | 162096 | 87 | 23.5 | -22.5 | 5' arm 3' arm | |||
8651 | + | 164790 | 90 | 19 | -20.6 | YP_053222 | 5' arm 3' arm | ||
8654 | + | 170226 | 88 | 21.5 | -25.5 | YP_053234 | 5' arm 3' arm | ||
8642 | + | 138797 | 85 | 19 | -22.9 | 5' arm 3' arm | |||
8640 | + | 138474 | 89 | 19.5 | -22.8 | 5' arm 3' arm | |||
8639 | + | 136097 | 89 | 30.5 | -25.6 | NP_057744 | 5' arm 3' arm | ||
8637 | + | 135871 | 87 | 26.5 | -31.6 | NP_057745 | 5' arm 3' arm | ||
8638 | + | 136008 | 89 | 25 | -22.6 | NP_057833 | 5' arm 3' arm | ||
8635 | + | 135509 | 89 | 24.5 | -25.2 | 5' arm 3' arm | |||
8636 | + | 135626 | 90 | 24 | -22.6 | NP_057832 | 5' arm 3' arm | ||
8641 | + | 138651 | 90 | 22.5 | -19.6 | 5' arm 3' arm | |||
8643 | + | 139111 | 87 | 20.5 | -21.8 | 5' arm 3' arm | |||
8644 | + | 139599 | 90 | 20.5 | -35.1 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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