miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2910 + 36701 90 20.5 -30.3 5' arm      3' arm
3012 + 126203 89 27 -20.8 5' arm      3' arm
3013 + 126962 89 20.5 -20.1 5' arm      3' arm
2885 + 11292 89 20.5 -20.1 5' arm      3' arm
3005 + 123318 90 21 -22.34 5' arm      3' arm
2883 + 10427 88 20 -21.2 5' arm      3' arm
3134 - 128876 89 21.5 -26.2 5' arm      3' arm
3011 + 126097 88 20 -21.2 5' arm      3' arm
3130 - 124409 90 22 -22.9 5' arm      3' arm
2884 + 10533 89 27 -20.8 5' arm      3' arm
3045 - 27028 90 23 -27.5 5' arm      3' arm
3109 - 99701 90 20 -22.7 5' arm      3' arm
2934 + 62383 87 21 -21.7 5' arm      3' arm
2925 + 53836 88 21.5 -22.5 5' arm      3' arm
3127 - 122245 89 20 -21.1 5' arm      3' arm
2981 + 99612 90 19 -24.3 5' arm      3' arm
2877 + 7648 90 21 -22.34 5' arm      3' arm
3121 - 115696 89 20 -20.6 5' arm      3' arm
3128 - 123617 90 22 -26.3 5' arm      3' arm
3035 - 13206 89 21.5 -26.2 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.