miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10314012 NC_002552.1 Hop latent virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9558 + 2033 82 21 -23.12 NP_066258 5' arm      3' arm
9559 + 2548 80 22.5 -20.4 NP_066258 5' arm      3' arm
9560 - 1542 85 21 -22.6 NP_066258 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.