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GenBank Identifier | RefSeq Acc. | Name |
9630966 | NC_001973.1 | Lymantria dispar nucleopolyhedrovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
7633 | + | 16 | 88 | 20.5 | -23.5 | 5' arm 3' arm | |||
7634 | + | 239 | 89 | 23 | -20.8 | 5' arm 3' arm | |||
7635 | + | 432 | 90 | 22 | -20.2 | 5' arm 3' arm | |||
7636 | + | 919 | 86 | 20 | -23.1 | NP_047637 | 5' arm 3' arm | ||
7637 | + | 1712 | 87 | 19 | -23.1 | NP_047638 | 5' arm 3' arm | ||
7638 | + | 2102 | 90 | 24.5 | -28.5 | NP_047638 | 5' arm 3' arm | ||
7639 | + | 2238 | 89 | 23 | -25.1 | NP_047638 | 5' arm 3' arm | ||
7640 | + | 2585 | 89 | 21.5 | -26.7 | NP_047638 | 5' arm 3' arm | ||
7641 | + | 3580 | 90 | 19 | -25.9 | NP_047639 | 5' arm 3' arm | ||
7642 | + | 4882 | 90 | 22.5 | -35.5 | NP_047640 | 5' arm 3' arm | ||
7643 | + | 5856 | 90 | 21.5 | -30.1 | NP_047640 | 5' arm 3' arm | ||
7644 | + | 6600 | 87 | 21.5 | -21.3 | NP_047640 | 5' arm 3' arm | ||
7645 | + | 6940 | 88 | 20 | -22.6 | NP_047640 | 5' arm 3' arm | ||
7646 | + | 7392 | 90 | 22.5 | -21.6 | NP_047640 | 5' arm 3' arm | ||
7647 | + | 8946 | 89 | 21 | -33.5 | NP_047643 | 5' arm 3' arm | ||
7648 | + | 9075 | 88 | 19.5 | -24.5 | NP_047643 | 5' arm 3' arm | ||
7649 | + | 9672 | 90 | 22.5 | -21.5 | 5' arm 3' arm | |||
7650 | + | 10062 | 85 | 24 | -20 | 5' arm 3' arm | |||
7651 | + | 11550 | 90 | 20.5 | -21.6 | NP_047647 | 5' arm 3' arm | ||
7652 | + | 14268 | 88 | 19 | -22.2 | NP_047650 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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