miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630966 NC_001973.1 Lymantria dispar nucleopolyhedrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7688 + 41353 90 28.5 -23 NP_047680 5' arm      3' arm
8053 - 148906 90 28.5 -20.5 5' arm      3' arm
7790 + 122755 89 27.5 -31.7 NP_047765 5' arm      3' arm
7840 + 156497 89 27 -36.3 NP_047797 5' arm      3' arm
7951 - 79922 88 26.5 -27.7 NP_047720 5' arm      3' arm
7868 - 17521 87 26.5 -27.5 NP_047652 5' arm      3' arm
7887 - 31675 89 26 -20.5 5' arm      3' arm
7781 + 119903 89 25.5 -22.72 5' arm      3' arm
7848 - 484 90 25.5 -27 5' arm      3' arm
7697 + 46093 90 25.5 -20.8 5' arm      3' arm
7749 + 88618 90 25.5 -25.9 5' arm      3' arm
7676 + 30340 86 25 -25.6 5' arm      3' arm
8052 - 148671 90 24.5 -34.8 5' arm      3' arm
7659 + 17825 89 24.5 -23.7 NP_047653 5' arm      3' arm
7678 + 31587 89 24.5 -20.7 5' arm      3' arm
8068 - 159174 89 24.5 -32.9 NP_047798 5' arm      3' arm
7689 + 41510 88 24.5 -24.1 NP_047680 5' arm      3' arm
7919 - 60481 90 24.5 -19.7 NP_047702 5' arm      3' arm
8026 - 132139 89 24.5 -25.6 NP_047773 5' arm      3' arm
7857 - 8442 88 24.5 -21.2 NP_047642 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.