miRNA display CGI


Results 1 - 15 of 15 are showing below:
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GenBank Identifier RefSeq Acc. Name
18138257 NC_003349.1 Helicoverpa zea single nucleocapsid nucleopolyhedrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12713 - 120684 89 23.5 -24.1 NP_542755 5' arm      3' arm
12712 - 113814 90 24 -24.1 NP_542747 5' arm      3' arm
12711 - 100565 87 19 -24.4 NP_542732 5' arm      3' arm
12710 - 82340 89 21 -31.8 NP_542714 5' arm      3' arm
12709 - 82178 89 21 -20.6 NP_542714 5' arm      3' arm
12708 - 48593 89 19.5 -25.9 5' arm      3' arm
12707 - 35882 86 24.5 -20.8 NP_542664 5' arm      3' arm
12706 - 35250 87 27.5 -33.1 5' arm      3' arm
12705 + 116685 89 22.5 -26.2 NP_542750 5' arm      3' arm
12704 + 104390 87 22 -21.3 NP_542737 5' arm      3' arm
12703 + 88810 85 24.5 -27.1 NP_542722 5' arm      3' arm
12702 + 73527 89 22 -22 NP_542706 5' arm      3' arm
12701 + 52368 88 21 -22.2 5' arm      3' arm
12700 + 37308 88 20 -28.7 NP_542665 5' arm      3' arm
12699 + 19044 90 21.5 -22.6 NP_542644 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.