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| GenBank Identifier | RefSeq Acc. | Name |
| 52353967 | NC_000852.3 | Paramecium bursaria Chlorella virus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 785 | - | 286075 | 90 | 21 | -29.6 | NP_048949 | 5' arm 3' arm | ||
| 758 | + | 174871 | 90 | 22.5 | -28.8 | NP_048709 | 5' arm 3' arm | ||
| 760 | + | 208393 | 90 | 25 | -26.8 | NP_048785 | 5' arm 3' arm | ||
| 761 | + | 210503 | 88 | 22 | -26.4 | NP_048787 | 5' arm 3' arm | ||
| 777 | - | 151319 | 85 | 19 | -25.5 | NP_048650 | 5' arm 3' arm | ||
| 767 | + | 301602 | 87 | 19 | -25.4 | NP_048981 | 5' arm 3' arm | ||
| 762 | + | 210719 | 89 | 21.5 | -25.2 | NP_048787 | 5' arm 3' arm | ||
| 779 | - | 179257 | 90 | 20 | -24.9 | NP_048720 | 5' arm 3' arm | ||
| 766 | + | 301466 | 90 | 20 | -24.6 | NP_048981 | 5' arm 3' arm | ||
| 772 | - | 33479 | 90 | 20.5 | -24.32 | NP_048408 | 5' arm 3' arm | ||
| 769 | + | 310207 | 90 | 19 | -24.1 | NP_048999 | 5' arm 3' arm | ||
| 781 | - | 218593 | 90 | 26.5 | -23.9 | 5' arm 3' arm | |||
| 773 | - | 87391 | 90 | 20 | -23.8 | NP_048517 | 5' arm 3' arm | ||
| 783 | - | 257560 | 87 | 24 | -23.5 | NP_048896 | 5' arm 3' arm | ||
| 784 | - | 283127 | 90 | 19.5 | -23.4 | NP_048939 | 5' arm 3' arm | ||
| 755 | + | 142304 | 88 | 23 | -23.4 | NP_048632 | 5' arm 3' arm | ||
| 778 | - | 161901 | 90 | 19.5 | -22.8 | NP_048680 | 5' arm 3' arm | ||
| 756 | + | 157430 | 90 | 19.5 | -22.8 | NP_048670 | 5' arm 3' arm | ||
| 759 | + | 208294 | 90 | 27 | -22.6 | NP_048785 | 5' arm 3' arm | ||
| 754 | + | 117556 | 87 | 19.5 | -22.5 | NP_048586 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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