miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
56160952 AC_000020.1 Canine adenovirus type 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
750 - 27430 86 25 -23.3 AP_000632 5' arm      3' arm
728 + 2805 81 23.5 -19.9 AP_000610 5' arm      3' arm
748 - 24360 90 23.5 -28.7 AP_000628 5' arm      3' arm
740 - 15658 89 23 -31 AP_000619 5' arm      3' arm
745 - 21165 89 23 -29 AP_000624 5' arm      3' arm
736 - 13065 87 22.5 -20.2 AP_000617 5' arm      3' arm
739 - 15049 89 22 -29.5 AP_000619 5' arm      3' arm
751 - 29884 90 22 -20.8 AP_000636 5' arm      3' arm
732 + 11314 90 22 -20.3 AP_000616 5' arm      3' arm
744 - 20175 90 22 -24.7 AP_000623 5' arm      3' arm
752 - 31309 90 21.5 -22.4 5' arm      3' arm
727 + 15 90 21.5 -22.4 5' arm      3' arm
743 - 19857 85 21 -22.2 AP_000623 5' arm      3' arm
737 - 13756 90 21 -24.6 AP_000617 5' arm      3' arm
733 + 21510 90 21 -19.4 AP_000624 5' arm      3' arm
749 - 26865 90 21 -22.8 AP_000632 5' arm      3' arm
731 + 10301 90 20.5 -22 AP_000615 5' arm      3' arm
735 - 633 84 20 -27.9 AP_000608 5' arm      3' arm
730 + 5473 90 20 -20.3 AP_000613 5' arm      3' arm
742 - 19342 90 20 -23.8 AP_000622 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.