miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
200	-	20928	89	20.5	-19.6	AP_000175		5' arm      3' arm
165	+	8658	90	21.5	-19.8	AP_000167		5' arm      3' arm
211	-	33712	87	22	-19.8	AP_000192		5' arm      3' arm
174	+	19029	90	20.5	-20	AP_000175		5' arm      3' arm
189	-	13765	87	21	-20	AP_000169		5' arm      3' arm
159	+	5467	89	19.5	-20.1	AP_000166		5' arm      3' arm
214	-	35294	84	20	-20.1	AP_000196		5' arm      3' arm
161	+	6445	87	20	-20.2	AP_000166		5' arm      3' arm
192	-	17030	89	20.5	-20.2	AP_000172		5' arm      3' arm
210	-	27515	90	19.5	-20.2	AP_000181		5' arm      3' arm
180	-	5846	88	21	-20.2	AP_000166		5' arm      3' arm
156	+	4617	83	19.5	-20.7	AP_000165		5' arm      3' arm
172	+	17120	86	20	-20.7	AP_000172		5' arm      3' arm
196	-	18501	88	22	-20.7	AP_000174		5' arm      3' arm
193	-	17262	81	21.5	-21.1	AP_000172		5' arm      3' arm
185	-	12462	89	20	-21.5	AP_000169		5' arm      3' arm
201	-	23121	88	19.5	-21.7	AP_000177		5' arm      3' arm
202	-	23559	88	20.5	-22	AP_000177		5' arm      3' arm
157	+	4887	89	21.5	-22	AP_000165		5' arm      3' arm
176	+	23846	90	21.5	-22	AP_000177		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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