miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
173	+	17207	88	19	-25.6	AP_000172		5' arm      3' arm
174	+	19029	90	20.5	-20	AP_000175		5' arm      3' arm
175	+	23279	79	19	-26	AP_000177		5' arm      3' arm
176	+	23846	90	21.5	-22	AP_000177		5' arm      3' arm
177	+	25038	87	20.5	-23.4	AP_000178		5' arm      3' arm
178	+	25895	90	22	-37.3	AP_000178		5' arm      3' arm
179	-	2179	87	21	-30.6	AP_000162		5' arm      3' arm
180	-	5846	88	21	-20.2	AP_000166		5' arm      3' arm
181	-	6418	86	20	-22.8	AP_000166		5' arm      3' arm
182	-	9095	86	20.5	-25.6	AP_000167		5' arm      3' arm
183	-	10718	87	23	-36.3			5' arm      3' arm
184	-	11153	90	23	-29.2	AP_000168		5' arm      3' arm
185	-	12462	89	20	-21.5	AP_000169		5' arm      3' arm
186	-	12655	86	22.5	-29.7	AP_000169		5' arm      3' arm
187	-	13108	90	20.5	-27.2	AP_000169		5' arm      3' arm
188	-	13645	89	19	-25.1	AP_000169		5' arm      3' arm
189	-	13765	87	21	-20	AP_000169		5' arm      3' arm
190	-	13940	90	20	-26.7	AP_000169		5' arm      3' arm
191	-	15522	89	21.5	-22.6	AP_000170		5' arm      3' arm
192	-	17030	89	20.5	-20.2	AP_000172		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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