miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9627065 NC_001523.1 Deer papillomavirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3248 + 8172 90 22.5 -22.2 5' arm      3' arm
3247 + 7119 89 21.5 -23.1 NP_041300 5' arm      3' arm
3251 - 3539 90 21.5 -27.5 NP_041297 5' arm      3' arm
3250 - 3325 90 20 -24 NP_041296 5' arm      3' arm
3249 - 1725 87 19.5 -23.3 NP_041295 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.