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| GenBank Identifier | RefSeq Acc. | Name |
| 9627363 | NC_001591.1 | Human papillomavirus type 49 |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3417 | + | 768 | 90 | 22 | -24.7 | NP_041833 | 5' arm 3' arm | ||
| 3418 | + | 3850 | 90 | 19.5 | -23.1 | NP_041835 | 5' arm 3' arm | ||
| 3419 | - | 3791 | 78 | 19.5 | -27.3 | NP_041835 | 5' arm 3' arm | ||
| 3420 | - | 4635 | 83 | 21.5 | -19.8 | NP_041836 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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