miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9627196 NC_001541.1 Cottontail rabbit papillomavirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3266 + 558 87 21.5 -26.01 NP_077106 5' arm      3' arm
3267 - 3324 90 20.5 -26 NP_077109 5' arm      3' arm
3268 - 3800 89 20.5 -23.5 NP_077110 5' arm      3' arm
3269 - 3947 90 19 -21.9 NP_077110 5' arm      3' arm
3271 - 5464 89 24 -23.2 NP_077112 5' arm      3' arm
3270 - 5064 88 21.5 -29 NP_077112 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.