miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
24943089 NC_004367.1 Callitrichine herpesvirus 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17360 - 69253 90 22.5 -26.7 NP_733892 5' arm      3' arm
17282 + 69578 85 19.5 -20 NP_733892 5' arm      3' arm
17359 - 62892 89 19.5 -22.2 NP_733886 5' arm      3' arm
17280 + 53350 90 19 -27.6 NP_733880 5' arm      3' arm
17279 + 51555 90 21.5 -26 NP_733878 5' arm      3' arm
17278 + 40852 89 19.5 -21.82 NP_733870 5' arm      3' arm
17277 + 39912 88 19 -30 NP_733870 5' arm      3' arm
17276 + 37775 77 19.5 -26.1 NP_733869 5' arm      3' arm
17275 + 26311 89 19.5 -23.4 NP_733862 5' arm      3' arm
17272 + 20614 89 19 -24.3 NP_733860 5' arm      3' arm
17353 - 19259 90 19 -21.8 NP_733859 5' arm      3' arm
17352 - 17878 89 23.5 -26.2 NP_733858 5' arm      3' arm
17270 + 13336 87 21.5 -19.8 NP_733857 5' arm      3' arm
17348 - 11257 90 27 -31.4 NP_733856 5' arm      3' arm
17347 - 9622 87 19 -21.2 NP_733855 5' arm      3' arm
17346 - 1559 88 20.5 -21.9 NP_733852 5' arm      3' arm
17300 + 123525 89 21.5 -19.6 5' arm      3' arm
17303 + 124688 87 22 -23.5 5' arm      3' arm
17296 + 121344 88 20 -22.3 5' arm      3' arm
17295 + 121253 89 20 -27.4 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.