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GenBank Identifier | RefSeq Acc. | Name |
9633619 | NC_000940.1 | Porcine enteric calicivirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
1109 | + | 142 | 88 | 24 | -26.8 | NP_051035 | 5' arm 3' arm | ||
1110 | - | 744 | 90 | 21 | -21.6 | NP_051035 | 5' arm 3' arm | ||
1111 | - | 3341 | 83 | 21 | -22.5 | NP_051035 | 5' arm 3' arm | ||
1112 | - | 3509 | 90 | 22.5 | -19.8 | NP_051035 | 5' arm 3' arm | ||
1113 | - | 3708 | 90 | 19 | -22.8 | NP_051035 | 5' arm 3' arm | ||
1114 | - | 4456 | 90 | 19 | -22 | NP_051035 | 5' arm 3' arm | ||
1115 | - | 5431 | 88 | 20 | -19.7 | NP_051035 | 5' arm 3' arm | ||
1116 | - | 7258 | 82 | 20.5 | -25.71 | NP_051036 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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