miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630327 NC_001895.1 Enterobacteria phage P2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7121 + 17667 89 19 -20.5 NP_046778 5' arm      3' arm
7133 - 5765 88 19 -22.7 NP_046761 5' arm      3' arm
7104 + 691 88 19 -19.84 NP_046757 5' arm      3' arm
7118 + 12789 87 19 -22.5 NP_046775 5' arm      3' arm
7139 - 10459 84 19 -23.8 NP_046771 5' arm      3' arm
7136 - 7362 89 19 -19.9 NP_046765 5' arm      3' arm
7116 + 10685 82 19.5 -20.1 NP_046771 5' arm      3' arm
7119 + 13106 85 19.5 -24.7 NP_046775 5' arm      3' arm
7145 - 18325 81 19.5 -19.5 NP_046778 5' arm      3' arm
7146 - 19801 90 19.5 -25.5 NP_046780 5' arm      3' arm
7125 + 23047 90 19.5 -22.7 NP_046784 5' arm      3' arm
7123 + 21469 83 19.5 -21.5 NP_046782 5' arm      3' arm
7142 - 13190 82 20 -20.3 NP_046775 5' arm      3' arm
7120 + 13731 90 20 -22.9 NP_046775 5' arm      3' arm
7141 - 12055 84 20 -21.1 NP_046773 5' arm      3' arm
7110 + 6518 89 20 -22.8 NP_046763 5' arm      3' arm
7137 - 8073 88 20 -21.9 NP_046767 5' arm      3' arm
7149 - 21250 88 20 -24.6 NP_046782 5' arm      3' arm
7152 - 28216 88 20 -23.2 NP_046795 5' arm      3' arm
7131 - 4360 85 20 -26.1 NP_046760 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.