miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630327 NC_001895.1 Enterobacteria phage P2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7126 + 24383 87 21.5 -24.3 5' arm      3' arm
7123 + 21469 83 19.5 -21.5 NP_046782 5' arm      3' arm
7122 + 19033 87 22 -27.7 NP_046779 5' arm      3' arm
7124 + 21585 90 26 -24.8 NP_046782 5' arm      3' arm
7121 + 17667 89 19 -20.5 NP_046778 5' arm      3' arm
7118 + 12789 87 19 -22.5 NP_046775 5' arm      3' arm
7119 + 13106 85 19.5 -24.7 NP_046775 5' arm      3' arm
7116 + 10685 82 19.5 -20.1 NP_046771 5' arm      3' arm
7120 + 13731 90 20 -22.9 NP_046775 5' arm      3' arm
7103 + 3 89 21.5 -25 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.