miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
53869480 NC_005345.2 Bacteriophage VWB virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26256 + 1860 89 22.5 -19.5 5' arm      3' arm
26431 - 48433 90 20 -28 5' arm      3' arm
26322 + 44868 90 21 -23.6 5' arm      3' arm
26316 + 41116 87 19 -22.9 5' arm      3' arm
26418 - 41197 90 19 -23.4 5' arm      3' arm
26326 + 47019 89 19 -28.1 5' arm      3' arm
26419 - 41314 89 23.5 -27.5 5' arm      3' arm
26272 + 12543 87 25 -27.2 5' arm      3' arm
26319 + 42682 89 21.5 -20.9 5' arm      3' arm
26422 - 42499 87 20.5 -23.2 5' arm      3' arm
26268 + 8617 88 22 -23.9 5' arm      3' arm
26430 - 47563 88 20 -21.3 5' arm      3' arm
26282 + 22718 88 20.5 -25 5' arm      3' arm
26260 + 3471 88 21.5 -23 5' arm      3' arm
26400 - 33270 87 22.5 -26.8 5' arm      3' arm
26274 + 15609 87 20 -31.4 5' arm      3' arm
26255 + 1481 90 19.5 -21.3 5' arm      3' arm
26374 - 22617 90 22 -22.1 5' arm      3' arm
26259 + 2304 81 19 -21.2 5' arm      3' arm
26273 + 12699 87 20.5 -25.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.