miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
53869480 NC_005345.2 Bacteriophage VWB virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26273 + 12699 87 20.5 -25.8 5' arm      3' arm
26267 + 7937 89 21.5 -28.3 NP_958252 5' arm      3' arm
26269 + 9091 90 21 -19.7 NP_958254 5' arm      3' arm
26270 + 9374 90 20.5 -29.3 NP_958254 5' arm      3' arm
26262 + 5054 89 20 -26.7 NP_958248 5' arm      3' arm
26266 + 7392 90 20 -20.7 NP_958252 5' arm      3' arm
26263 + 6409 90 19 -23.3 NP_958251 5' arm      3' arm
26272 + 12543 87 25 -27.2 5' arm      3' arm
26271 + 11044 89 21 -23.2 NP_958257 5' arm      3' arm
26264 + 6513 87 21.5 -20.2 NP_958251 5' arm      3' arm
26268 + 8617 88 22 -23.9 5' arm      3' arm
26265 + 6756 89 22 -22.7 NP_958251 5' arm      3' arm
26257 + 2056 89 22 -23.8 NP_958243 5' arm      3' arm
26254 + 641 90 21.5 -24.5 YP_115515 5' arm      3' arm
26260 + 3471 88 21.5 -23 5' arm      3' arm
26261 + 4845 90 21 -24.5 NP_958248 5' arm      3' arm
26253 + 437 90 19.5 -21 YP_115515 5' arm      3' arm
26255 + 1481 90 19.5 -21.3 5' arm      3' arm
26258 + 2192 90 19.5 -23 NP_958243 5' arm      3' arm
26259 + 2304 81 19 -21.2 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.