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GenBank Identifier | RefSeq Acc. | Name |
40807285 | NC_001978.2 | Bacteriophage phi-C31 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8093 | + | 12860 | 84 | 24 | -32 | NP_047936 | 5' arm 3' arm | ||
8155 | - | 853 | 89 | 24 | -28.4 | NP_047923 | 5' arm 3' arm | ||
8111 | + | 22201 | 89 | 24 | -29.5 | NP_047946 | 5' arm 3' arm | ||
8130 | + | 27503 | 90 | 23.5 | -33.4 | 5' arm 3' arm | |||
8127 | + | 26689 | 88 | 23.5 | -23.5 | NP_047955 | 5' arm 3' arm | ||
8186 | - | 21291 | 88 | 23.5 | -21.8 | NP_047944 | 5' arm 3' arm | ||
8201 | - | 29970 | 89 | 23.5 | -30.2 | 5' arm 3' arm | |||
8086 | + | 8681 | 79 | 23.5 | -37.1 | NP_047932 | 5' arm 3' arm | ||
8080 | + | 6755 | 85 | 23.5 | -19.7 | NP_047929 | 5' arm 3' arm | ||
8200 | - | 29651 | 88 | 23 | -34.2 | 5' arm 3' arm | |||
8209 | - | 33412 | 90 | 23 | -30.8 | NP_047962 | 5' arm 3' arm | ||
8090 | + | 10213 | 81 | 23 | -21.3 | NP_047934 | 5' arm 3' arm | ||
8188 | - | 21757 | 89 | 23 | -19.6 | 5' arm 3' arm | |||
8100 | + | 17301 | 89 | 23 | -29 | NP_047941 | 5' arm 3' arm | ||
8199 | - | 28723 | 90 | 23 | -25.1 | NP_047956 | 5' arm 3' arm | ||
8147 | + | 36987 | 89 | 23 | -36.6 | 5' arm 3' arm | |||
8118 | + | 24604 | 88 | 23 | -20.6 | NP_047952 | 5' arm 3' arm | ||
8177 | - | 16558 | 90 | 23 | -20 | NP_047940 | 5' arm 3' arm | ||
8213 | - | 34833 | 89 | 22.5 | -31.4 | 5' arm 3' arm | |||
8079 | + | 6523 | 90 | 22.5 | -27.7 | NP_047929 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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