miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
40807285 NC_001978.2 Bacteriophage phi-C31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8093 + 12860 84 24 -32 NP_047936 5' arm      3' arm
8155 - 853 89 24 -28.4 NP_047923 5' arm      3' arm
8111 + 22201 89 24 -29.5 NP_047946 5' arm      3' arm
8130 + 27503 90 23.5 -33.4 5' arm      3' arm
8127 + 26689 88 23.5 -23.5 NP_047955 5' arm      3' arm
8186 - 21291 88 23.5 -21.8 NP_047944 5' arm      3' arm
8201 - 29970 89 23.5 -30.2 5' arm      3' arm
8086 + 8681 79 23.5 -37.1 NP_047932 5' arm      3' arm
8080 + 6755 85 23.5 -19.7 NP_047929 5' arm      3' arm
8200 - 29651 88 23 -34.2 5' arm      3' arm
8209 - 33412 90 23 -30.8 NP_047962 5' arm      3' arm
8090 + 10213 81 23 -21.3 NP_047934 5' arm      3' arm
8188 - 21757 89 23 -19.6 5' arm      3' arm
8100 + 17301 89 23 -29 NP_047941 5' arm      3' arm
8199 - 28723 90 23 -25.1 NP_047956 5' arm      3' arm
8147 + 36987 89 23 -36.6 5' arm      3' arm
8118 + 24604 88 23 -20.6 NP_047952 5' arm      3' arm
8177 - 16558 90 23 -20 NP_047940 5' arm      3' arm
8213 - 34833 89 22.5 -31.4 5' arm      3' arm
8079 + 6523 90 22.5 -27.7 NP_047929 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.