miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
40807285 NC_001978.2 Bacteriophage phi-C31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8205 - 31707 89 20 -20.9 NP_047959 5' arm      3' arm
8204 - 30582 87 21.5 -23.9 NP_047957 5' arm      3' arm
8203 - 30426 84 22.5 -20.7 NP_047957 5' arm      3' arm
8202 - 30063 90 20 -22.2 NP_047957 5' arm      3' arm
8201 - 29970 89 23.5 -30.2 5' arm      3' arm
8200 - 29651 88 23 -34.2 5' arm      3' arm
8199 - 28723 90 23 -25.1 NP_047956 5' arm      3' arm
8198 - 27593 83 22 -32.1 5' arm      3' arm
8197 - 26442 89 19.5 -21.4 NP_047955 5' arm      3' arm
8196 - 26213 87 20.5 -24.3 NP_047955 5' arm      3' arm
8195 - 24961 82 20.5 -25.4 NP_047953 5' arm      3' arm
8194 - 23600 89 22 -23.2 NP_047948 5' arm      3' arm
8193 - 23033 87 19 -30.3 5' arm      3' arm
8192 - 22918 89 19.5 -25.1 NP_047947 5' arm      3' arm
8191 - 22563 90 19.5 -22.1 NP_047946 5' arm      3' arm
8190 - 22409 89 21.5 -29 NP_047946 5' arm      3' arm
8189 - 21903 90 19.5 -19.9 NP_047946 5' arm      3' arm
8188 - 21757 89 23 -19.6 5' arm      3' arm
8187 - 21652 90 22 -28.5 5' arm      3' arm
8186 - 21291 88 23.5 -21.8 NP_047944 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.