miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1052	-	61452	89	23.5	-27.6			5' arm      3' arm
1051	-	55034	90	23	-19.6	NP_049532		5' arm      3' arm
1050	-	51716	87	21.5	-25	NP_049532		5' arm      3' arm
1049	-	51467	89	19	-20.52	NP_049532		5' arm      3' arm
1048	-	50472	88	23	-30.7	NP_049532		5' arm      3' arm
1047	-	41566	89	23.5	-29.31	NP_049522		5' arm      3' arm
1046	-	39157	88	19.5	-21	NP_049519		5' arm      3' arm
1045	-	38786	90	19	-21.5	NP_049519		5' arm      3' arm
1044	-	38499	90	21	-21	NP_049519		5' arm      3' arm
1043	-	27953	90	20.5	-24.1	NP_049507		5' arm      3' arm
1042	-	25738	89	23.5	-26.3	NP_049503		5' arm      3' arm
1041	-	24818	86	20	-26.3	NP_049502		5' arm      3' arm
1040	-	24489	89	19.5	-21.81	NP_049502		5' arm      3' arm
1039	-	16536	88	21.5	-20	NP_049493		5' arm      3' arm
1038	-	15299	87	21.5	-22.2	NP_049490		5' arm      3' arm
1037	-	14849	87	20.5	-20.3	NP_049489		5' arm      3' arm
1036	-	13975	88	24.5	-31.1	NP_049488		5' arm      3' arm
1035	-	9649	89	19.5	-20.8			5' arm      3' arm
1034	-	7087	89	19.5	-20.5	NP_049474		5' arm      3' arm
1033	-	4158	90	20	-21.1	NP_049469		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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