miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1020	+	45497	87	19	-34.4			5' arm      3' arm
1028	+	56199	86	20.5	-31.6	NP_049532		5' arm      3' arm
1036	-	13975	88	24.5	-31.1	NP_049488		5' arm      3' arm
1048	-	50472	88	23	-30.7	NP_049532		5' arm      3' arm
1031	+	58662	86	24	-29.8			5' arm      3' arm
1012	+	33438	89	23	-29.7			5' arm      3' arm
1047	-	41566	89	23.5	-29.31	NP_049522		5' arm      3' arm
1029	+	56397	90	23.5	-28.2	NP_049532		5' arm      3' arm
1011	+	27501	90	21.5	-28			5' arm      3' arm
1052	-	61452	89	23.5	-27.6			5' arm      3' arm
1005	+	20259	87	22.5	-27.1	NP_049499		5' arm      3' arm
1041	-	24818	86	20	-26.3	NP_049502		5' arm      3' arm
1042	-	25738	89	23.5	-26.3	NP_049503		5' arm      3' arm
1016	+	38160	87	22	-26	NP_049519		5' arm      3' arm
1006	+	23965	86	22	-25.44	NP_049502		5' arm      3' arm
1050	-	51716	87	21.5	-25	NP_049532		5' arm      3' arm
1010	+	26172	86	21.5	-24.9	NP_049505		5' arm      3' arm
1004	+	16649	89	21.5	-24.7	NP_049493		5' arm      3' arm
1027	+	52128	88	23	-24.5	NP_049532		5' arm      3' arm
1014	+	36811	89	23	-24.2	NP_049517		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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