miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9632466 NC_000924.1 Bacteriophage 933W provirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
1021 + 46818 89 20 -23.4 NP_049528 5' arm      3' arm
1014 + 36811 89 23 -24.2 NP_049517 5' arm      3' arm
1015 + 37429 89 22.5 -22.3 NP_049518 5' arm      3' arm
1016 + 38160 87 22 -26 NP_049519 5' arm      3' arm
1018 + 42527 90 21 -20.6 NP_049523 5' arm      3' arm
1017 + 40995 89 20.5 -21.2 NP_049522 5' arm      3' arm
1019 + 42892 90 19.5 -21.5 NP_049523 5' arm      3' arm
1022 + 47608 84 23.5 -23.6 NP_049530 5' arm      3' arm
1023 + 49438 86 21 -22.2 NP_049532 5' arm      3' arm
1013 + 34262 88 23 -24 NP_049513 5' arm      3' arm
1012 + 33438 89 23 -29.7 5' arm      3' arm
1011 + 27501 90 21.5 -28 5' arm      3' arm
1004 + 16649 89 21.5 -24.7 NP_049493 5' arm      3' arm
1003 + 14646 85 20 -23.56 NP_049489 5' arm      3' arm
1005 + 20259 87 22.5 -27.1 NP_049499 5' arm      3' arm
1006 + 23965 86 22 -25.44 NP_049502 5' arm      3' arm
1009 + 26016 85 21.5 -21.9 5' arm      3' arm
1010 + 26172 86 21.5 -24.9 NP_049505 5' arm      3' arm
1007 + 25278 90 20 -20.8 NP_049503 5' arm      3' arm
1008 + 25626 84 19.5 -22 NP_049503 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.