miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
17570786 NC_003298.1 Bacteriophage T3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12039 + 8091 89 21.5 -24 NP_523308 5' arm      3' arm
12040 + 11285 80 22 -22 NP_523315 5' arm      3' arm
12041 + 11835 90 19.5 -25.4 NP_523316 5' arm      3' arm
12042 + 12723 89 19 -23.5 NP_523319 5' arm      3' arm
12043 + 17321 89 21.5 -20.4 NP_523329 5' arm      3' arm
12044 + 18627 86 19.5 -23 NP_523332 5' arm      3' arm
12045 + 19608 90 21.5 -21.3 NP_523332 5' arm      3' arm
12046 + 21231 89 20 -20.5 NP_523335 5' arm      3' arm
12047 + 25419 82 19.5 -21.7 5' arm      3' arm
12048 + 29236 90 19.5 -22.9 NP_523341 5' arm      3' arm
12049 + 32037 83 19 -25.5 NP_523341 5' arm      3' arm
12050 + 32730 90 19 -20.9 5' arm      3' arm
12051 + 35149 90 21.5 -24.6 NP_523345 5' arm      3' arm
12052 + 35348 81 21.5 -21.2 NP_523345 5' arm      3' arm
12053 - 4148 89 22.5 -22.3 NP_523301 5' arm      3' arm
12054 - 5215 80 19 -22 NP_523301 5' arm      3' arm
12055 - 21752 86 21 -19.8 NP_523335 5' arm      3' arm
12056 - 22761 87 19 -19.7 NP_523336 5' arm      3' arm
12057 - 23607 89 20 -22.6 NP_523337 5' arm      3' arm
12058 - 37840 90 19.5 -25 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.