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GenBank Identifier | RefSeq Acc. | Name |
9626665 | NC_001466.1 | Chloris striate mosaic virus |
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ID![]() |
strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
2547 | + | 518 | 86 | 19 | -23.8 | NP_040950 | 5' arm 3' arm | ||
2548 | + | 639 | 90 | 19.5 | -21.5 | NP_040952 | 5' arm 3' arm | ||
2549 | + | 1071 | 90 | 21 | -21.2 | NP_040952 | 5' arm 3' arm | ||
2550 | + | 2251 | 88 | 20 | -21.5 | NP_597785 | 5' arm 3' arm | ||
2551 | - | 1156 | 87 | 20 | -20.5 | NP_040952 | 5' arm 3' arm | ||
2552 | - | 1649 | 89 | 19.5 | -24.5 | NP_899201 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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