miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626133 NC_001396.1 Xanthomonas phage Cf1c

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2182 + 1920 90 23.5 -23.1 5' arm      3' arm
2190 - 260 90 21 -23.7 5' arm      3' arm
2194 - 3680 84 21.5 -28.2 5' arm      3' arm
2183 + 2340 87 20 -25.7 5' arm      3' arm
2189 + 5745 90 22 -19.7 5' arm      3' arm
2184 + 3229 90 22 -20.1 NP_040477 5' arm      3' arm
2185 + 3357 83 19 -23.7 NP_040477 5' arm      3' arm
2191 - 515 89 19.5 -21 NP_536674 5' arm      3' arm
2180 + 630 89 20.5 -24.3 NP_536675 5' arm      3' arm
2192 - 1489 87 20.5 -23.4 NP_536675 5' arm      3' arm
2181 + 746 86 22.5 -24.9 NP_536675 5' arm      3' arm
2193 - 1604 88 23 -29.3 NP_536675 5' arm      3' arm
2187 + 4181 89 19.5 -20.7 NP_536676 5' arm      3' arm
2186 + 3843 90 21.5 -19.4 NP_536676 5' arm      3' arm
2195 - 4613 87 23.5 -24.7 NP_536677 5' arm      3' arm
2188 + 5196 87 19 -23.1 NP_536679 5' arm      3' arm
2196 - 6205 83 24 -26.1 NP_536680 5' arm      3' arm
2197 - 6864 82 20 -19.9 NP_536680 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.