miRNA display CGI


Results 1 - 20 of 25 are showing below:
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GenBank Identifier RefSeq Acc. Name
9625366 NC_001331.1 Pseudomonas phage Pf1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
1310 - 138 87 23 -23.1 NP_039600 5' arm      3' arm
1315 - 3034 87 24.5 -22.8 NP_039606 5' arm      3' arm
1319 - 5250 90 23 -27.4 NP_039607 5' arm      3' arm
1318 - 4808 90 22 -21.5 NP_039607 5' arm      3' arm
1317 - 3578 90 22 -21.9 NP_039606 5' arm      3' arm
1322 - 7057 90 21 -36.5 NP_039613 5' arm      3' arm
1321 - 6944 89 20.5 -22 NP_039613 5' arm      3' arm
1320 - 6529 88 20 -21.1 NP_039610 5' arm      3' arm
1316 - 3274 90 19.5 -25.5 NP_039606 5' arm      3' arm
1312 - 908 90 24 -24.4 NP_039603 5' arm      3' arm
1314 - 2020 86 22.5 -25.7 NP_039604 5' arm      3' arm
1311 - 246 88 19 -22 NP_039600 5' arm      3' arm
1313 - 1040 87 20 -23.5 NP_039603 5' arm      3' arm
1306 + 5231 89 21 -23.4 NP_039607 5' arm      3' arm
1300 + 947 89 22.5 -30.7 NP_039603 5' arm      3' arm
1304 + 2948 87 22 -25.7 NP_039606 5' arm      3' arm
1299 + 696 90 21.5 -22.6 NP_039602 5' arm      3' arm
1303 + 2820 88 21 -21.9 NP_039605 5' arm      3' arm
1308 + 5818 86 22.5 -20.7 NP_039608 5' arm      3' arm
1309 + 6723 86 19 -20.9 NP_039611 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.