miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626316 NC_001418.1 Pseudomonas phage Pf3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2407 + 141 90 23 -24.2 NP_040652 5' arm      3' arm
2408 + 4342 90 20 -27.7 5' arm      3' arm
2409 + 4508 89 22 -22.7 NP_040657 5' arm      3' arm
2410 - 3788 89 19 -22.6 NP_040656 5' arm      3' arm
2411 - 4431 90 23 -29.5 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.