miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20428547 NC_003762.1 Rice dwarf virus segment 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15116 + 702 88 20 -23.2 NP_620532 5' arm      3' arm
15117 + 2135 87 20 -20 NP_620532 5' arm      3' arm
15118 - 790 88 20.5 -20.4 NP_620532 5' arm      3' arm
15115 - 640 87 21 -21.2 NP_620531 5' arm      3' arm
15119 + 3031 90 21 -25.4 NP_620543 5' arm      3' arm
15123 + 3226 76 21.5 -19.7 NP_620545 5' arm      3' arm
15120 + 1640 81 22 -20.5 NP_620545 5' arm      3' arm
15114 + 554 87 23.5 -22.1 NP_620531 5' arm      3' arm
15121 + 2457 89 23.5 -23.3 NP_620545 5' arm      3' arm
15122 + 3032 89 27 -27.9 NP_620545 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.