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GenBank Identifier | RefSeq Acc. | Name |
9790313 | NC_001547.1 | Sindbis virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
3335 | - | 11569 | 89 | 25 | -19.6 | 5' arm 3' arm | |||
3334 | - | 10164 | 90 | 19 | -23.7 | NP_062890 | 5' arm 3' arm | ||
3331 | - | 3396 | 87 | 23.5 | -19.7 | NP_062888 | 5' arm 3' arm | ||
3332 | - | 5157 | 89 | 21 | -20.7 | NP_062889 | 5' arm 3' arm | ||
3333 | - | 5586 | 89 | 20 | -21.7 | NP_062889 | 5' arm 3' arm | ||
3328 | - | 677 | 90 | 21 | -23.8 | NP_062888 | 5' arm 3' arm | ||
3330 | - | 2205 | 90 | 20.5 | -20 | NP_062888 | 5' arm 3' arm | ||
3329 | - | 1130 | 90 | 19.5 | -24.3 | NP_062889 | 5' arm 3' arm | ||
3325 | + | 724 | 90 | 22 | -22.7 | NP_062888 | 5' arm 3' arm | ||
3326 | + | 848 | 88 | 20 | -27.5 | NP_062889 | 5' arm 3' arm | ||
3327 | + | 5498 | 89 | 23 | -23.9 | NP_062888 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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